PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000253174
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GATA
Protein Properties Length: 269aa    MW: 29607.6 Da    PI: 8.1129
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000253174genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.42.6e-20153187135
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                    C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++
  MDP0000253174 153 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 187
                    ********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.89147183IPR000679Zinc finger, GATA-type
SMARTSM004011.1E-19147199IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.38E-13150189No hitNo description
Gene3DG3DSA:3.30.50.106.5E-17151187IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.21E-13152184No hitNo description
PROSITE patternPS003440153178IPR000679Zinc finger, GATA-type
PfamPF003206.3E-18153187IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009909Biological Processregulation of flower development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MHRCSSGSSH GGNMVGGPCS CGVLHHTQSN SSFSMLFSMP NHHKPYDHIH HETSYDHHHM  60
YPFASPSSSV DCTLSLGTPS TRLTENDAVS DDRRARNGER RSGNCVSNFC WDLLQPNKSS  120
PSSHHKNGSR GGNINGVTNA VSGNNDPLLA RRCANCDTTS TPLWRNGPRG PKSLCNACGI  180
RFKKEERRAT AAAANGGGSS VVGMESNGYH HHNSWIPHSQ TQKMACFGNE FRFIEDDTVH  240
HENDMNGIPF LSWRLNVTDR PSLVHDFTR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008338089.10.0PREDICTED: GATA transcription factor 18
SwissprotQ8LC791e-64GAT18_ARATH; GATA transcription factor 18
TrEMBLM5VSX01e-130M5VSX0_PRUPE; Uncharacterized protein
STRINGPOPTR_0005s12440.12e-97(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41053459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.12e-62GATA family protein